Detailed information of SNP:
|
SNP ID:
sf0210040757(Gbrowse)
Chromosome: chr02 Position: 10040757 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 65.60% | 34.40% |
| All Indica | 789 | 79.21% | 20.79% |
| All Japonica | 496 | 45.16% | 54.84% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 371 | 79.78% | 20.22% |
| Indica II | 208 | 80.29% | 19.71% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210040757 | T->G | LOC_Os02g17450(LOC_Os02g17450.1) | INTRON |