Detailed information of SNP:
|
SNP ID:
sf0210111972(Gbrowse)
Chromosome: chr02 Position: 10111972 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 68.95% | 31.05% |
| All Indica | 782 | 69.05% | 30.95% |
| All Japonica | 497 | 73.84% | 26.16% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 369 | 69.65% | 30.35% |
| Indica II | 208 | 64.42% | 35.58% |
| Indica Intermediate | 205 | 72.68% | 27.32% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210111972 | T->C | LOC_Os02g17580(LOC_Os02g17580.1) | INTRON |