Detailed information of SNP:
|
SNP ID:
sf0210157398(Gbrowse)
Chromosome: chr02 Position: 10157398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.75% | 3.25% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210157398 | C->T | LOC_Os02g17650(LOC_Os02g17650.2) | INTRON |
| sf0210157398 | C->T | LOC_Os02g17650(LOC_Os02g17650.1) | INTRON |