Detailed information of SNP:
|
SNP ID:
sf0210196584(Gbrowse)
Chromosome: chr02 Position: 10196584 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 82.71% | 17.29% |
| All Indica | 718 | 76.46% | 23.54% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 324 | 78.09% | 21.91% |
| Indica II | 207 | 70.53% | 29.47% |
| Indica Intermediate | 187 | 80.21% | 19.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210196584 | T->C | INTERGENIC | None |