Detailed information of SNP:
|
SNP ID:
sf0210234943(Gbrowse)
Chromosome: chr02 Position: 10234943 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 68.77% | 31.23% |
| All Indica | 789 | 92.14% | 7.86% |
| All Japonica | 497 | 34.41% | 65.59% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210234943 | A->G | LOC_Os02g17720(LOC_Os02g17720.1) | Non-Synonymous SNP |