Detailed information of SNP:
|
SNP ID:
sf0210259256(Gbrowse)
Chromosome: chr02 Position: 10259256 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 91.34% | 8.66% |
| All Indica | 722 | 84.21% | 15.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 345 | 82.03% | 17.97% |
| Indica II | 184 | 88.59% | 11.41% |
| Indica Intermediate | 193 | 83.94% | 16.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210259256 | T->C | INTERGENIC | None |