Detailed information of SNP:
|
SNP ID:
sf0210265225(Gbrowse)
Chromosome: chr02 Position: 10265225 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 55.24% | 44.76% |
| All Indica | 783 | 24.14% | 75.86% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 372 | 10.22% | 89.78% |
| Indica II | 209 | 49.76% | 50.24% |
| Indica Intermediate | 202 | 23.27% | 76.73% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210265225 | C->T | LOC_Os02g17760(LOC_Os02g17760.1) | INTRON |