Detailed information of SNP:
|
SNP ID:
sf0210283007(Gbrowse)
Chromosome: chr02 Position: 10283007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 97.50% | 2.50% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 444 | 92.34% | 7.66% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 88.51% | 11.49% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210283007 | C->A | LOC_Os02g17780(LOC_Os02g17780.1) | INTRON |