Detailed information of SNP:
|
SNP ID:
sf0210303460(Gbrowse)
Chromosome: chr02 Position: 10303460 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 74.49% | 25.51% |
| All Indica | 791 | 55.25% | 44.75% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 44.99% | 55.01% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210303460 | C->T | LOC_Os02g17820(LOC_Os02g17820.1) | Synonymous |