Detailed information of SNP:
|
SNP ID:
sf0210316952(Gbrowse)
Chromosome: chr02 Position: 10316952 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 99.10% | 0.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 422 | 97.16% | 2.84% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 60 | 81.67% | 18.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210316952 | C->T | INTERGENIC | None |