Detailed information of SNP:
|
SNP ID:
sf0210369535(Gbrowse)
Chromosome: chr02 Position: 10369535 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1195 | 84.77% | 15.23% |
| All Indica | 737 | 82.36% | 17.64% |
| All Japonica | 353 | 93.48% | 6.52% |
| Aus | 61 | 59.02% | 40.98% |
| Indica I | 330 | 90.61% | 9.39% |
| Indica II | 208 | 70.19% | 29.81% |
| Indica Intermediate | 199 | 81.41% | 18.59% |
| Temperate Japonica | 224 | 91.07% | 8.93% |
| Tropical Japonica | 73 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210369535 | G->A | INTERGENIC | None |