Detailed information of SNP:
|
SNP ID:
sf0210408968(Gbrowse)
Chromosome: chr02 Position: 10408968 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 93.89% | 6.11% |
| All Indica | 730 | 92.47% | 7.53% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 348 | 94.83% | 5.17% |
| Indica II | 184 | 89.67% | 10.33% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210408968 | C->T | LOC_Os02g17960(LOC_Os02g17960.1) | Non-Synonymous SNP |