Detailed information of SNP:
|
SNP ID:
sf0210480402(Gbrowse)
Chromosome: chr02 Position: 10480402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 87.62% | 12.38% |
| All Indica | 789 | 78.83% | 21.17% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 208 | 78.85% | 21.15% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210480402 | C->T | LOC_Os02g18050(LOC_Os02g18050.1) | Synonymous |