Detailed information of SNP:
|
SNP ID:
sf0210522450(Gbrowse)
Chromosome: chr02 Position: 10522450 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 79.38% | 20.62% |
| All Indica | 796 | 68.72% | 31.28% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 208 | 72.60% | 27.40% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210522450 | G->A | LOC_Os02g18110(LOC_Os02g18110.1) | INTRON |