Detailed information of SNP:
|
SNP ID:
sf0210574752(Gbrowse)
Chromosome: chr02 Position: 10574752 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 92.16% | 7.84% |
| All Indica | 760 | 86.84% | 13.16% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 86.55% | 13.45% |
| Indica II | 200 | 83.00% | 17.00% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210574752 | T->C | LOC_Os02g18210(LOC_Os02g18210.1) | Non-Synonymous SNP |