Detailed information of SNP:
|
SNP ID:
sf0210593335(Gbrowse)
Chromosome: chr02 Position: 10593335 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 76.94% | 23.06% |
| All Indica | 798 | 64.66% | 35.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210593335 | T->C | INTERGENIC | None |