Detailed information of SNP:
|
SNP ID:
sf0210594189(Gbrowse)
Chromosome: chr02 Position: 10594189 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 89.82% | 10.18% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 463 | 70.41% | 29.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 58.92% | 41.08% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 60 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210594189 | A->G | LOC_Os02g18260(LOC_Os02g18260.1) | INTRON |