Detailed information of SNP:
|
SNP ID:
sf0210599885(Gbrowse)
Chromosome: chr02 Position: 10599885 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 98.00% | 2.00% |
| All Indica | 780 | 96.67% | 3.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 97.81% | 2.19% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210599885 | C->G | INTERGENIC | None |