Detailed information of SNP:
|
SNP ID:
sf0210599978(Gbrowse)
Chromosome: chr02 Position: 10599978 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 94.08% | 5.92% |
| All Indica | 787 | 92.63% | 7.37% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 88.01% | 11.99% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 94.20% | 5.80% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210599978 | C->T | INTERGENIC | None |