Detailed information of SNP:
|
SNP ID:
sf0210606534(Gbrowse)
Chromosome: chr02 Position: 10606534 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1229 | 85.92% | 14.08% |
| All Indica | 654 | 79.51% | 20.49% |
| All Japonica | 458 | 93.45% | 6.55% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 308 | 69.16% | 30.84% |
| Indica II | 165 | 95.15% | 4.85% |
| Indica Intermediate | 181 | 82.87% | 17.13% |
| Temperate Japonica | 312 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 71.76% | 28.24% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210606534 | C->T | LOC_Os02g18290(LOC_Os02g18290.1) | Non-Synonymous SNP |