Detailed information of SNP:
|
SNP ID:
sf0210614422(Gbrowse)
Chromosome: chr02 Position: 10614422 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.68% | 34.32% |
| All Indica | 796 | 43.72% | 56.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 211 | 41.23% | 58.77% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210614422 | C->T | INTERGENIC | None |