Detailed information of SNP:
|
SNP ID:
sf0210662975(Gbrowse)
Chromosome: chr02 Position: 10662975 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 89.02% | 10.98% |
| All Indica | 765 | 80.26% | 19.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 77.18% | 22.82% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 198 | 68.69% | 31.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210662975 | G->A | LOC_Os02g18340(LOC_Os02g18340.1) | Non-Synonymous SNP |