Detailed information of SNP:
|
SNP ID:
sf0210666522(Gbrowse)
Chromosome: chr02 Position: 10666522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.74% | 7.26% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210666522 | G->A | INTERGENIC | None |