Detailed information of SNP:
|
SNP ID:
sf0210693848(Gbrowse)
Chromosome: chr02 Position: 10693848 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.54% | 34.46% |
| All Indica | 799 | 44.56% | 55.44% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 39.47% | 60.53% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210693848 | C->A | LOC_Os02g18370(LOC_Os02g18370.1) | Non-Synonymous SNP |