Detailed information of SNP:
|
SNP ID:
sf0210765710(Gbrowse)
Chromosome: chr02 Position: 10765710 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 62.33% | 37.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210765710 | C->T | LOC_Os02g18490(LOC_Os02g18490.1) | INTRON |