Detailed information of SNP:
|
SNP ID:
sf0210775890(Gbrowse)
Chromosome: chr02 Position: 10775890 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.09% | 30.91% |
| All Indica | 797 | 47.30% | 52.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 209 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210775890 | C->A | INTERGENIC | None |