Detailed information of SNP:
|
SNP ID:
sf0210784016(Gbrowse)
Chromosome: chr02 Position: 10784016 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.63% | 16.37% |
| All Indica | 797 | 79.55% | 20.45% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 373 | 86.60% | 13.40% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210784016 | T->C | INTERGENIC | None |