Detailed information of SNP:
|
SNP ID:
sf0210809499(Gbrowse)
Chromosome: chr02 Position: 10809499 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 84.39% | 15.61% |
| All Indica | 796 | 72.74% | 27.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 68.01% | 31.99% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210809499 | G->A | LOC_Os02g18540(LOC_Os02g18540.1) | INTRON |