Detailed information of SNP:
|
SNP ID:
sf0210811554(Gbrowse)
Chromosome: chr02 Position: 10811554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.65% | 18.35% |
| All Indica | 797 | 73.27% | 26.73% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 68.90% | 31.10% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210811554 | G->A | LOC_Os02g18540(LOC_Os02g18540.1) | INTRON |