Detailed information of SNP:
SNP ID:
sf0210828424(Gbrowse)
Chromosome: chr02 Position: 10828424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1350 | 97.33% | 2.67% |
All Indica | 787 | 100.00% | 0.00% |
All Japonica | 447 | 91.95% | 8.05% |
Aus | 65 | 100.00% | 0.00% |
Indica I | 370 | 100.00% | 0.00% |
Indica II | 208 | 100.00% | 0.00% |
Indica Intermediate | 209 | 100.00% | 0.00% |
Temperate Japonica | 304 | 89.14% | 10.86% |
Tropical Japonica | 82 | 100.00% | 0.00% |
Japonica Intermediate | 61 | 95.08% | 4.92% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0210828424 | C->T | LOC_Os02g18560(LOC_Os02g18560.1) | INTRON |