Detailed information of SNP:
|
SNP ID:
sf0210828424(Gbrowse)
Chromosome: chr02 Position: 10828424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 97.33% | 2.67% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 447 | 91.95% | 8.05% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 89.14% | 10.86% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210828424 | C->T | LOC_Os02g18560(LOC_Os02g18560.1) | INTRON |