Detailed information of SNP:
|
SNP ID:
sf0210890396(Gbrowse)
Chromosome: chr02 Position: 10890396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1207 | 89.31% | 10.69% |
| All Indica | 749 | 100.00% | 0.00% |
| All Japonica | 347 | 64.55% | 35.45% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 352 | 100.00% | 0.00% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 194 | 100.00% | 0.00% |
| Temperate Japonica | 227 | 72.25% | 27.75% |
| Tropical Japonica | 68 | 41.18% | 58.82% |
| Japonica Intermediate | 52 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210890396 | A->G | INTERGENIC | None |