Detailed information of SNP:
|
SNP ID:
sf0210930734(Gbrowse)
Chromosome: chr02 Position: 10930734 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 84.34% | 15.66% |
| All Indica | 791 | 73.20% | 26.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 66.04% | 33.96% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 208 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210930734 | A->G | LOC_Os02g18740(LOC_Os02g18740.1) | Synonymous |