Detailed information of SNP:
|
SNP ID:
sf0210970554(Gbrowse)
Chromosome: chr02 Position: 10970554 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 89.00% | 11.00% |
| All Indica | 748 | 84.76% | 15.24% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 339 | 83.78% | 16.22% |
| Indica II | 202 | 82.18% | 17.82% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0210970554 | C->T | INTERGENIC | None |