Detailed information of SNP:
|
SNP ID:
sf0211089956(Gbrowse)
Chromosome: chr02 Position: 11089956 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 84.34% | 15.66% |
| All Indica | 798 | 74.31% | 25.69% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 67.38% | 32.62% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211089956 | T->C | INTERGENIC | None |