Detailed information of SNP:
|
SNP ID:
sf0211187899(Gbrowse)
Chromosome: chr02 Position: 11187899 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 51.20% | 48.80% |
| All Indica | 797 | 27.60% | 72.40% |
| All Japonica | 494 | 90.08% | 9.92% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 30.48% | 69.52% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211187899 | G->A | INTERGENIC | None |