Detailed information of SNP:
|
SNP ID:
sf0211188934(Gbrowse)
Chromosome: chr02 Position: 11188934 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 95.07% | 4.93% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 457 | 87.96% | 12.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 97.75% | 2.25% |
| Tropical Japonica | 85 | 60.00% | 40.00% |
| Japonica Intermediate | 61 | 77.05% | 22.95% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211188934 | A->T | LOC_Os02g19200(LOC_Os02g19200.1) | INTRON |