Detailed information of SNP:
|
SNP ID:
sf0211205568(Gbrowse)
Chromosome: chr02 Position: 11205568 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 73.88% | 26.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 458 | 25.76% | 74.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 19.61% | 80.39% |
| Tropical Japonica | 86 | 46.51% | 53.49% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211205568 | T->A | LOC_Os02g19210(LOC_Os02g19210.1) | UTR_3_PRIME |
| sf0211205568 | T->A | LOC_Os02g19210(LOC_Os02g19210.2) | UTR_3_PRIME |