Detailed information of SNP:
|
SNP ID:
sf0211208905(Gbrowse)
Chromosome: chr02 Position: 11208905 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1170 | 57.69% | 42.31% |
| All Indica | 588 | 99.32% | 0.68% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 44 | 97.73% | 2.27% |
| Indica I | 266 | 100.00% | 0.00% |
| Indica II | 146 | 98.63% | 1.37% |
| Indica Intermediate | 176 | 98.86% | 1.14% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 29 | 55.17% | 44.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211208905 | T->C | INTERGENIC | None |