Detailed information of SNP:
|
SNP ID:
sf0211277320(Gbrowse)
Chromosome: chr02 Position: 11277320 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 96.74% | 3.26% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 91.04% | 8.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 59.55% | 40.45% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211277320 | C->T | LOC_Os02g19300(LOC_Os02g19300.1) | INTRON |