Detailed information of SNP:
|
SNP ID:
sf0211295375(Gbrowse)
Chromosome: chr02 Position: 11295375 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 69.76% | 30.24% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 481 | 16.84% | 83.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 15.12% | 84.88% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211295375 | T->G | LOC_Os02g19330(LOC_Os02g19330.1) | Non-Synonymous SNP |
| sf0211295375 | T->G | LOC_Os02g19330(LOC_Os02g19330.2) | Non-Synonymous SNP |