Detailed information of SNP:



SNP ID: sf0211295375(Gbrowse)

Chromosome: chr02

Position: 11295375
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1402 69.76% 30.24%
All Indica799 99.87% 0.13%
All Japonica481 16.84% 83.16%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica324 15.12% 84.88%
Tropical Japonica92 22.83% 77.17%
Japonica Intermediate65 16.92% 83.08%
Group VI/Aromatic14 14.29% 85.71%
Intermediate41 73.17% 26.83%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0211295375 T->G LOC_Os02g19330(LOC_Os02g19330.1) Non-Synonymous SNP
sf0211295375 T->G LOC_Os02g19330(LOC_Os02g19330.2) Non-Synonymous SNP