Detailed information of SNP:
|
SNP ID:
sf0211308826(Gbrowse)
Chromosome: chr02 Position: 11308826 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 55.00% | 45.00% |
| All Indica | 718 | 25.35% | 74.65% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 40.00% | 60.00% |
| Indica I | 343 | 30.32% | 69.68% |
| Indica II | 193 | 19.17% | 80.83% |
| Indica Intermediate | 182 | 22.53% | 77.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211308826 | C->G | LOC_Os02g19350(LOC_Os02g19350.1) | SNPs that introduce stop codons |