Detailed information of SNP:
|
SNP ID:
sf0211319187(Gbrowse)
Chromosome: chr02 Position: 11319187 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 65.01% | 34.99% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 4.89% | 95.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 16.67% | 83.33% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211319187 | T->A | INTERGENIC | None |