Detailed information of SNP:
|
SNP ID:
sf0211322651(Gbrowse)
Chromosome: chr02 Position: 11322651 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.23% | 41.77% |
| All Indica | 796 | 91.46% | 8.54% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211322651 | T->C | INTERGENIC | None |