Detailed information of SNP:
|
SNP ID:
sf0211327073(Gbrowse)
Chromosome: chr02 Position: 11327073 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.68% | 45.32% |
| All Indica | 793 | 85.12% | 14.88% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 372 | 81.18% | 18.82% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 208 | 85.58% | 14.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211327073 | A->G | LOC_Os02g19390(LOC_Os02g19390.1) | Non-Synonymous SNP |