Detailed information of SNP:
|
SNP ID:
sf0211327132(Gbrowse)
Chromosome: chr02 Position: 11327132 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 96.15% | 3.85% |
| All Indica | 762 | 94.09% | 5.91% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 353 | 94.90% | 5.10% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211327132 | T->C | LOC_Os02g19390(LOC_Os02g19390.1) | Synonymous |