Detailed information of SNP:
|
SNP ID:
sf0211327686(Gbrowse)
Chromosome: chr02 Position: 11327686 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 96.71% | 3.29% |
| All Indica | 781 | 94.11% | 5.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 365 | 92.88% | 7.12% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211327686 | G->A | LOC_Os02g19390(LOC_Os02g19390.1) | Synonymous |