Detailed information of SNP:
|
SNP ID:
sf0211327852(Gbrowse)
Chromosome: chr02 Position: 11327852 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 98.57% | 1.43% |
| All Indica | 787 | 97.97% | 2.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211327852 | G->A | LOC_Os02g19390(LOC_Os02g19390.1) | Non-Synonymous SNP |