Detailed information of SNP:
|
SNP ID:
sf0211330172(Gbrowse)
Chromosome: chr02 Position: 11330172 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 94.58% | 5.42% |
| All Indica | 769 | 90.51% | 9.49% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 357 | 86.83% | 13.17% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 202 | 90.59% | 9.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211330172 | G->A | LOC_Os02g19400(LOC_Os02g19400.1) | Non-Synonymous SNP |