Detailed information of SNP:
|
SNP ID:
sf0211446227(Gbrowse)
Chromosome: chr02 Position: 11446227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.56% | 46.44% |
| All Indica | 798 | 28.82% | 71.18% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 31.82% | 68.18% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211446227 | G->A | LOC_Os02g19600(LOC_Os02g19600.1) | Non-Synonymous SNP |