Detailed information of SNP:
|
SNP ID:
sf0211510630(Gbrowse)
Chromosome: chr02 Position: 11510630 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 54.72% | 45.28% |
| All Indica | 791 | 85.59% | 14.41% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 371 | 83.02% | 16.98% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211510630 | G->A | LOC_Os02g19670(LOC_Os02g19670.1) | INTRON |